FDD3258 HT20-1 Introduction to High Performance Computing

Course Modules

Introduction to Course and Logistics

Introduction to Course and Logistics Introduction to Course and Logistics

Lecture: Overview of the Course and Logistics Page

Lecture: Overview of the Course and Logistics Lecture: Overview of the Course and Logistics 1

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Tutorial: Computing on Beskow Page

Tutorial: Computing on Beskow Tutorial: Computing on Beskow 2

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Get an Account on Beskow Page

Get an Account on Beskow Get an Account on Beskow 3

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Connect to Beskow Page

Connect to Beskow Connect to Beskow 4

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Move Data in/out. CFS vs AFS Page

Move Data in/out. CFS vs AFS Move Data in/out. CFS vs AFS 5

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Compiling and Running a Job on Beskow Page

Compiling and Running a Job on Beskow Compiling and Running a Job on Beskow 6

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Cheat Sheet Page

Cheat Sheet Cheat Sheet 7

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Essential SLURM for job scheduling External Url

Essential SLURM for job scheduling Essential SLURM for job scheduling 8

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Prerequisite knowledge - A C Primer Page

Prerequisite knowledge - A C Primer Prerequisite knowledge - A C Primer 10

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Quiz: Using Beskow New Quiz

Quiz: Using Beskow Quiz: Using Beskow 14 11

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Discussion: Questions on Connecting and Running on Beskow Discussion Topic

Discussion: Questions on Connecting and Running on Beskow Discussion: Questions on Connecting and Running on Beskow 12

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Performance Modeling & Benchmarking

Performance Modeling & Benchmarking Performance Modeling & Benchmarking

Lecture: Basic Performance Models for Supercomputers Page

Lecture: Basic Performance Models for Supercomputers Lecture: Basic Performance Models for Supercomputers 1

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Code: Matrix Multiplication Attachment

Code: Matrix Multiplication Code: Matrix Multiplication 2

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Lecture: Benchmarks Page

Lecture: Benchmarks Lecture: Benchmarks 3

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Lecture: Modeling Sparse Matrix Vector Multiply Page

Lecture: Modeling Sparse Matrix Vector Multiply Lecture: Modeling Sparse Matrix Vector Multiply 4

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Code: STREAM Attachment

Code: STREAM Code: STREAM 5

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Code: Sparse Matrix Vector Multiply Attachment

Code: Sparse Matrix Vector Multiply Code: Sparse Matrix Vector Multiply 6

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Lecture: More on Cache Memories Page

Lecture: More on Cache Memories Lecture: More on Cache Memories 7

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Lecture: Measuring Performance Page

Lecture: Measuring Performance Lecture: Measuring Performance 8

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Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results External Url

Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results 9

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Lecture: Matrix Transpose Page

Lecture: Matrix Transpose Lecture: Matrix Transpose 10

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Code: Cache-Blocked Transpose Attachment

Code: Cache-Blocked Transpose Code: Cache-Blocked Transpose 11

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Optional Lecture: More on Caches II and III Page

Optional Lecture: More on Caches II and III Optional Lecture: More on Caches II and III 12

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Reading: What Every Programmer Should Know About Memory External Url

Reading: What Every Programmer Should Know About Memory Reading: What Every Programmer Should Know About Memory 13

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Lecture: Processing Instructions Page

Lecture: Processing Instructions Lecture: Processing Instructions 14

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Lecture: Matrix-Matrix Multiply Page

Lecture: Matrix-Matrix Multiply Lecture: Matrix-Matrix Multiply 15

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Lecture: Instruction Execution and Pipelining Page

Lecture: Instruction Execution and Pipelining Lecture: Instruction Execution and Pipelining 16

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Lecture: Vectors Page

Lecture: Vectors Lecture: Vectors 17

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Reading: Program Optimization Through Loop Vectorization External Url

Reading: Program Optimization Through Loop Vectorization Reading: Program Optimization Through Loop Vectorization 18

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Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler Page

Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler 19

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Lab: Memory Mountain, Clock Granularity and Perf Page

Lab: Memory Mountain, Clock Granularity and Perf Lab: Memory Mountain, Clock Granularity and Perf 20

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Tutorial: Getting Assembly Instructions Page

Tutorial: Getting Assembly Instructions Tutorial: Getting Assembly Instructions 21

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Tutorial: the Perf Tool Page

Tutorial: the Perf Tool Tutorial: the Perf Tool 22

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Tutorial: RDTSC Instruction Page

Tutorial: RDTSC Instruction Tutorial: RDTSC Instruction 23

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Discussion: Questions on Performance Modeling & Benchmarking Discussion Topic

Discussion: Questions on Performance Modeling & Benchmarking Discussion: Questions on Performance Modeling & Benchmarking 24

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Assignment I: Performance Modeling & Benchmarking Assignment

Assignment I: Performance Modeling & Benchmarking Assignment I: Performance Modeling & Benchmarking 1 25

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Intro to Parallelism and Shared Memory Programming with OpenMP

Intro to Parallelism and Shared Memory Programming with OpenMP Intro to Parallelism and Shared Memory Programming with OpenMP

Lecture: Discussing Speed-up Page

Lecture: Discussing Speed-up Lecture: Discussing Speed-up 1

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Lecture: Moore's Law and Speed-up Page

Lecture: Moore's Law and Speed-up Lecture: Moore's Law and Speed-up 2

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Reading: Exponential Laws of Computing Growth External Url

Reading: Exponential Laws of Computing Growth Reading: Exponential Laws of Computing Growth 4

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Lecture: Threads Page

Lecture: Threads Lecture: Threads 5

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Threads Cannot Be Implemented As a Library External Url

Threads Cannot Be Implemented As a Library Threads Cannot Be Implemented As a Library 6

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Lecture: OpenMP Definitions Page

Lecture: OpenMP Definitions Lecture: OpenMP Definitions 7

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Lecture: OpenMP Basics Page

Lecture: OpenMP Basics Lecture: OpenMP Basics 8

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Lecture: OpenMP and maxloc Page

Lecture: OpenMP and maxloc Lecture: OpenMP and maxloc 9

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Textbook: The Essential OpenMP External Url

Textbook: The Essential OpenMP Textbook: The Essential OpenMP 10

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Lecture: Calculate Pi with OpenMP Page

Lecture: Calculate Pi with OpenMP Lecture: Calculate Pi with OpenMP 11

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Reading: 32 OpenMP Traps For C/C++ Developers External Url

Reading: 32 OpenMP Traps For C/C++ Developers Reading: 32 OpenMP Traps For C/C++ Developers 12

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Discussion: Questions on Distributed Memory Programming & MPI Discussion Topic

Discussion: Questions on Distributed Memory Programming & MPI Discussion: Questions on Distributed Memory Programming & MPI 13

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Discussion: Questions on Parallelism and OpenMP Discussion Topic

Discussion: Questions on Parallelism and OpenMP Discussion: Questions on Parallelism and OpenMP 14

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Assignment II: Programming with OpenMP Assignment

Assignment II: Programming with OpenMP Assignment II: Programming with OpenMP 1 15

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Distributed Memory Programming & MPI

Distributed Memory Programming & MPI Distributed Memory Programming & MPI

Lecture: Distributed Memory Parallelism Page

Lecture: Distributed Memory Parallelism Lecture: Distributed Memory Parallelism 1

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Lecture: Parallel Programming Models for Scientific Computing Page

Lecture: Parallel Programming Models for Scientific Computing Lecture: Parallel Programming Models for Scientific Computing 2

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Lecture: Message Passing & our First MPI Code Page

Lecture: Message Passing & our First MPI Code Lecture: Message Passing & our First MPI Code 3

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Lecture: MPI Basic Send/Receive & our second MPI code Page

Lecture: MPI Basic Send/Receive & our second MPI code Lecture: MPI Basic Send/Receive & our second MPI code 4

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Textbook: Basic Usage of MPI with Send/Receive External Url

Textbook: Basic Usage of MPI with Send/Receive Textbook: Basic Usage of MPI with Send/Receive 5

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Lecture: More on Point-to-Point Communication Page

Lecture: More on Point-to-Point Communication Lecture: More on Point-to-Point Communication 6

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Textbook: MPI Non-Blocking Communication External Url

Textbook: MPI Non-Blocking Communication Textbook: MPI Non-Blocking Communication 7

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Lecture: Calculate PI with MPI Page

Lecture: Calculate PI with MPI Lecture: Calculate PI with MPI 8

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Lecture: MPI Datatypes Page

Lecture: MPI Datatypes Lecture: MPI Datatypes 9

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Textbook: Fun with Datatypes External Url

Textbook: Fun with Datatypes Textbook: Fun with Datatypes 10

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Lecture: MPI Process Topology Page

Lecture: MPI Process Topology Lecture: MPI Process Topology 11

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Textbook: Topologies. Example with Poisson Problem. External Url

Textbook: Topologies. Example with Poisson Problem. Textbook: Topologies. Example with Poisson Problem. 12

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Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures External Url

Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures 13

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Reading: Implementing the MPI process topology mechanism External Url

Reading: Implementing the MPI process topology mechanism Reading: Implementing the MPI process topology mechanism 14

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Lecture: Collective Communication and Computation in MPI Page

Lecture: Collective Communication and Computation in MPI Lecture: Collective Communication and Computation in MPI 15

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Lecture: More about Collective Communication and Computation in MPI Page

Lecture: More about Collective Communication and Computation in MPI Lecture: More about Collective Communication and Computation in MPI 16

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Textbook: Collective Communication External Url

Textbook: Collective Communication Textbook: Collective Communication 17

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Lecture: Performance Modeling & Ping-Pong Page

Lecture: Performance Modeling & Ping-Pong Lecture: Performance Modeling & Ping-Pong 18

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Optional: Hybrid Programming with MPI Page

Optional: Hybrid Programming with MPI Optional: Hybrid Programming with MPI 19

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Assignment III: MPI Programming Assignment

Assignment III: MPI Programming Assignment III: MPI Programming 1 20

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GPU Architecture and Programming GPUs with CUDA

GPU Architecture and Programming GPUs with CUDA GPU Architecture and Programming GPUs with CUDA

Lecture: Introduction to GPUs Page

Lecture: Introduction to GPUs Lecture: Introduction to GPUs 1

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Lecture: GPU = a throughput-oriented architecture Page

Lecture: GPU = a throughput-oriented architecture Lecture: GPU = a throughput-oriented architecture 2

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Lecture: GPU Architecture Page

Lecture: GPU Architecture Lecture: GPU Architecture 3

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Optional Reading: A Closer Look at GPUs Page

Optional Reading: A Closer Look at GPUs Optional Reading: A Closer Look at GPUs 4

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Optional Reading: NVIDIA Volta and Turing Page

Optional Reading: NVIDIA Volta and Turing Optional Reading: NVIDIA Volta and Turing 5

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Tutorial - Using GPUs on Tegner Page

Tutorial - Using GPUs on Tegner Tutorial - Using GPUs on Tegner 7

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Tutorial - Using CUDA in the laboratory workstations Page

Tutorial - Using CUDA in the laboratory workstations Tutorial - Using CUDA in the laboratory workstations 8

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Lecture: Computing with GPUs and CUDA Page

Lecture: Computing with GPUs and CUDA Lecture: Computing with GPUs and CUDA 10

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Lecture: CUDA Essentials I - Workflow and data movement Page

Lecture: CUDA Essentials I - Workflow and data movement Lecture: CUDA Essentials I - Workflow and data movement 11

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Lecture: CUDA Essentials II - Kernel launching Page

Lecture: CUDA Essentials II - Kernel launching Lecture: CUDA Essentials II - Kernel launching 12

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Lecture: CUDA Essentials III - Kernel execution, indexing and vector types Page

Lecture: CUDA Essentials III - Kernel execution, indexing and vector types Lecture: CUDA Essentials III - Kernel execution, indexing and vector types 13

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Lecture: Our first CUDA program Page

Lecture: Our first CUDA program Lecture: Our first CUDA program 14

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Tutorial: Timing your Kernel - CPU Timer & nvprof Page

Tutorial: Timing your Kernel - CPU Timer & nvprof Tutorial: Timing your Kernel - CPU Timer & nvprof 15

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Optional Lecture: CUDA Memories, shared and atomics Page

Optional Lecture: CUDA Memories, shared and atomics Optional Lecture: CUDA Memories, shared and atomics 16

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Optional Tutorial: 2D Shared Memory Page

Optional Tutorial: 2D Shared Memory Optional Tutorial: 2D Shared Memory 17

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Optional Tutorial: CUDA Libraries Page

Optional Tutorial: CUDA Libraries Optional Tutorial: CUDA Libraries 18

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Optional Quiz - Basic knowledge of CUDA Quiz

Optional Quiz - Basic knowledge of CUDA Optional Quiz - Basic knowledge of CUDA 19

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Discussion on GPU Architecture and CUDA Basics Discussion Topic

Discussion on GPU Architecture and CUDA Basics Discussion on GPU Architecture and CUDA Basics 20

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