FDD3258 HT20-1 Introduction to High Performance Computing

FDD3258 HT20-1 Introduction to High Performance Computing

Course Modules

Introduction to Course and Logistics

Introduction to Course and Logistics
Module Completed Module In Progress Module Locked
Introduction to Course and Logistics 37856    
  • Lecture: Overview of the Course and Logistics Page
    Lecture: Overview of the Course and Logistics Lecture: Overview of the Course and Logistics
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  • Tutorial: Computing on Beskow Page
    Tutorial: Computing on Beskow Tutorial: Computing on Beskow
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  • Get an Account on Beskow Page
    Get an Account on Beskow Get an Account on Beskow
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  • Connect to Beskow Page
    Connect to Beskow Connect to Beskow
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  • Move Data in/out. CFS vs AFS Page
    Move Data in/out. CFS vs AFS Move Data in/out. CFS vs AFS
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Compiling and Running a Job on Beskow Page
    Compiling and Running a Job on Beskow Compiling and Running a Job on Beskow
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Cheat Sheet Page
    Cheat Sheet Cheat Sheet
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  • Essential SLURM for job scheduling External Url
    Essential SLURM for job scheduling Essential SLURM for job scheduling
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  • Prerequisite knowledge - A C Primer Page
    Prerequisite knowledge - A C Primer Prerequisite knowledge - A C Primer
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  • Quiz: Using Beskow New Quiz
    Quiz: Using Beskow Quiz: Using Beskow
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  • Discussion: Questions on Connecting and Running on Beskow Discussion Topic
    Discussion: Questions on Connecting and Running on Beskow Discussion: Questions on Connecting and Running on Beskow
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Performance Modeling & Benchmarking

Performance Modeling & Benchmarking
Module Completed Module In Progress Module Locked
Performance Modeling & Benchmarking 37857    
  • Lecture: Basic Performance Models for Supercomputers Page
    Lecture: Basic Performance Models for Supercomputers Lecture: Basic Performance Models for Supercomputers
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  • Code: Matrix Multiplication Attachment
    Code: Matrix Multiplication Code: Matrix Multiplication
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  • Lecture: Benchmarks Page
    Lecture: Benchmarks Lecture: Benchmarks
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  • Lecture: Modeling Sparse Matrix Vector Multiply Page
    Lecture: Modeling Sparse Matrix Vector Multiply Lecture: Modeling Sparse Matrix Vector Multiply
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  • Code: STREAM Attachment
    Code: STREAM Code: STREAM
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  • Code: Sparse Matrix Vector Multiply Attachment
    Code: Sparse Matrix Vector Multiply Code: Sparse Matrix Vector Multiply
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  • Lecture: More on Cache Memories Page
    Lecture: More on Cache Memories Lecture: More on Cache Memories
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  • Lecture: Measuring Performance Page
    Lecture: Measuring Performance Lecture: Measuring Performance
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  • Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results External Url
    Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results
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  • Lecture: Matrix Transpose Page
    Lecture: Matrix Transpose Lecture: Matrix Transpose
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  • Code: Cache-Blocked Transpose Attachment
    Code: Cache-Blocked Transpose Code: Cache-Blocked Transpose
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  • Optional Lecture: More on Caches II and III Page
    Optional Lecture: More on Caches II and III Optional Lecture: More on Caches II and III
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  • Reading: What Every Programmer Should Know About Memory External Url
    Reading: What Every Programmer Should Know About Memory Reading: What Every Programmer Should Know About Memory
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  • Lecture: Processing Instructions Page
    Lecture: Processing Instructions Lecture: Processing Instructions
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  • Lecture: Matrix-Matrix Multiply Page
    Lecture: Matrix-Matrix Multiply Lecture: Matrix-Matrix Multiply
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  • Lecture: Instruction Execution and Pipelining Page
    Lecture: Instruction Execution and Pipelining Lecture: Instruction Execution and Pipelining
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  • Lecture: Vectors Page
    Lecture: Vectors Lecture: Vectors
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  • Reading: Program Optimization Through Loop Vectorization External Url
    Reading: Program Optimization Through Loop Vectorization Reading: Program Optimization Through Loop Vectorization
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  • Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler Page
    Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lab: Memory Mountain, Clock Granularity and Perf Page
    Lab: Memory Mountain, Clock Granularity and Perf Lab: Memory Mountain, Clock Granularity and Perf
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  • Tutorial: Getting Assembly Instructions Page
    Tutorial: Getting Assembly Instructions Tutorial: Getting Assembly Instructions
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  • Tutorial: the Perf Tool Page
    Tutorial: the Perf Tool Tutorial: the Perf Tool
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  • Tutorial: RDTSC Instruction Page
    Tutorial: RDTSC Instruction Tutorial: RDTSC Instruction
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  • Discussion: Questions on Performance Modeling & Benchmarking Discussion Topic
    Discussion: Questions on Performance Modeling & Benchmarking Discussion: Questions on Performance Modeling & Benchmarking
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Assignment I: Performance Modeling & Benchmarking Assignment
    Assignment I: Performance Modeling & Benchmarking Assignment I: Performance Modeling & Benchmarking
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Intro to Parallelism and Shared Memory Programming with OpenMP

Intro to Parallelism and Shared Memory Programming with OpenMP
Module Completed Module In Progress Module Locked
Intro to Parallelism and Shared Memory Programming with OpenMP 37858    
  • Lecture: Discussing Speed-up Page
    Lecture: Discussing Speed-up Lecture: Discussing Speed-up
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Moore's Law and Speed-up Page
    Lecture: Moore's Law and Speed-up Lecture: Moore's Law and Speed-up
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Reading: Exponential Laws of Computing Growth External Url
    Reading: Exponential Laws of Computing Growth Reading: Exponential Laws of Computing Growth
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Threads Page
    Lecture: Threads Lecture: Threads
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  • Threads Cannot Be Implemented As a Library External Url
    Threads Cannot Be Implemented As a Library Threads Cannot Be Implemented As a Library
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  • Lecture: OpenMP Definitions Page
    Lecture: OpenMP Definitions Lecture: OpenMP Definitions
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: OpenMP Basics Page
    Lecture: OpenMP Basics Lecture: OpenMP Basics
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  • Lecture: OpenMP and maxloc Page
    Lecture: OpenMP and maxloc Lecture: OpenMP and maxloc
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Textbook: The Essential OpenMP External Url
    Textbook: The Essential OpenMP Textbook: The Essential OpenMP
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Calculate Pi with OpenMP Page
    Lecture: Calculate Pi with OpenMP Lecture: Calculate Pi with OpenMP
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Reading: 32 OpenMP Traps For C/C++ Developers External Url
    Reading: 32 OpenMP Traps For C/C++ Developers Reading: 32 OpenMP Traps For C/C++ Developers
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Discussion: Questions on Distributed Memory Programming & MPI Discussion Topic
    Discussion: Questions on Distributed Memory Programming & MPI Discussion: Questions on Distributed Memory Programming & MPI
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  • Discussion: Questions on Parallelism and OpenMP Discussion Topic
    Discussion: Questions on Parallelism and OpenMP Discussion: Questions on Parallelism and OpenMP
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  • Assignment II: Programming with OpenMP Assignment
    Assignment II: Programming with OpenMP Assignment II: Programming with OpenMP
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Distributed Memory Programming & MPI

Distributed Memory Programming & MPI
Module Completed Module In Progress Module Locked
Distributed Memory Programming & MPI 37859    
  • Lecture: Distributed Memory Parallelism Page
    Lecture: Distributed Memory Parallelism Lecture: Distributed Memory Parallelism
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Parallel Programming Models for Scientific Computing Page
    Lecture: Parallel Programming Models for Scientific Computing Lecture: Parallel Programming Models for Scientific Computing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Message Passing & our First MPI Code Page
    Lecture: Message Passing & our First MPI Code Lecture: Message Passing & our First MPI Code
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: MPI Basic Send/Receive & our second MPI code Page
    Lecture: MPI Basic Send/Receive & our second MPI code Lecture: MPI Basic Send/Receive & our second MPI code
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  • Textbook: Basic Usage of MPI with Send/Receive External Url
    Textbook: Basic Usage of MPI with Send/Receive Textbook: Basic Usage of MPI with Send/Receive
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  • Lecture: More on Point-to-Point Communication Page
    Lecture: More on Point-to-Point Communication Lecture: More on Point-to-Point Communication
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  • Textbook: MPI Non-Blocking Communication External Url
    Textbook: MPI Non-Blocking Communication Textbook: MPI Non-Blocking Communication
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  • Lecture: Calculate PI with MPI Page
    Lecture: Calculate PI with MPI Lecture: Calculate PI with MPI
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  • Lecture: MPI Datatypes Page
    Lecture: MPI Datatypes Lecture: MPI Datatypes
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  • Textbook: Fun with Datatypes External Url
    Textbook: Fun with Datatypes Textbook: Fun with Datatypes
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: MPI Process Topology Page
    Lecture: MPI Process Topology Lecture: MPI Process Topology
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Textbook: Topologies. Example with Poisson Problem. External Url
    Textbook: Topologies. Example with Poisson Problem. Textbook: Topologies. Example with Poisson Problem.
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  • Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures External Url
    Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Reading: Implementing the MPI process topology mechanism External Url
    Reading: Implementing the MPI process topology mechanism Reading: Implementing the MPI process topology mechanism
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  • Lecture: Collective Communication and Computation in MPI Page
    Lecture: Collective Communication and Computation in MPI Lecture: Collective Communication and Computation in MPI
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  • Lecture: More about Collective Communication and Computation in MPI Page
    Lecture: More about Collective Communication and Computation in MPI Lecture: More about Collective Communication and Computation in MPI
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Textbook: Collective Communication External Url
    Textbook: Collective Communication Textbook: Collective Communication
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Performance Modeling & Ping-Pong Page
    Lecture: Performance Modeling & Ping-Pong Lecture: Performance Modeling & Ping-Pong
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  • Optional: Hybrid Programming with MPI Page
    Optional: Hybrid Programming with MPI Optional: Hybrid Programming with MPI
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  • Assignment III: MPI Programming Assignment
    Assignment III: MPI Programming Assignment III: MPI Programming
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GPU Architecture and Programming GPUs with CUDA

GPU Architecture and Programming GPUs with CUDA
Module Completed Module In Progress Module Locked
GPU Architecture and Programming GPUs with CUDA 37862    
  • Lecture: Introduction to GPUs Page
    Lecture: Introduction to GPUs Lecture: Introduction to GPUs
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: GPU = a throughput-oriented architecture Page
    Lecture: GPU = a throughput-oriented architecture Lecture: GPU = a throughput-oriented architecture
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: GPU Architecture Page
    Lecture: GPU Architecture Lecture: GPU Architecture
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  • Optional Reading: A Closer Look at GPUs Page
    Optional Reading: A Closer Look at GPUs Optional Reading: A Closer Look at GPUs
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  • Optional Reading: NVIDIA Volta and Turing Page
    Optional Reading: NVIDIA Volta and Turing Optional Reading: NVIDIA Volta and Turing
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Tutorial - Using GPUs on Tegner Page
    Tutorial - Using GPUs on Tegner Tutorial - Using GPUs on Tegner
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Tutorial - Using CUDA in the laboratory workstations Page
    Tutorial - Using CUDA in the laboratory workstations Tutorial - Using CUDA in the laboratory workstations
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  • Lecture: Computing with GPUs and CUDA Page
    Lecture: Computing with GPUs and CUDA Lecture: Computing with GPUs and CUDA
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  • Lecture: CUDA Essentials I - Workflow and data movement Page
    Lecture: CUDA Essentials I - Workflow and data movement Lecture: CUDA Essentials I - Workflow and data movement
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  • Lecture: CUDA Essentials II - Kernel launching Page
    Lecture: CUDA Essentials II - Kernel launching Lecture: CUDA Essentials II - Kernel launching
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  • Lecture: CUDA Essentials III - Kernel execution, indexing and vector types Page
    Lecture: CUDA Essentials III - Kernel execution, indexing and vector types Lecture: CUDA Essentials III - Kernel execution, indexing and vector types
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Our first CUDA program Page
    Lecture: Our first CUDA program Lecture: Our first CUDA program
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  • Tutorial: Timing your Kernel - CPU Timer & nvprof Page
    Tutorial: Timing your Kernel - CPU Timer & nvprof Tutorial: Timing your Kernel - CPU Timer & nvprof
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Optional Lecture: CUDA Memories, shared and atomics Page
    Optional Lecture: CUDA Memories, shared and atomics Optional Lecture: CUDA Memories, shared and atomics
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Optional Tutorial: 2D Shared Memory Page
    Optional Tutorial: 2D Shared Memory Optional Tutorial: 2D Shared Memory
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  • Optional Tutorial: CUDA Libraries Page
    Optional Tutorial: CUDA Libraries Optional Tutorial: CUDA Libraries
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Optional Quiz - Basic knowledge of CUDA Quiz
    Optional Quiz - Basic knowledge of CUDA Optional Quiz - Basic knowledge of CUDA
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  • Discussion on GPU Architecture and CUDA Basics Discussion Topic
    Discussion on GPU Architecture and CUDA Basics Discussion on GPU Architecture and CUDA Basics
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minimum score must view must submit must contribute