DD2356 methpc20 VT20-1 Methods in High Performance Computing

DD2356 methpc20 VT20-1 Methods in High Performance Computing

Course Modules

Introduction to Course and Logistics

Introduction to Course and Logistics
Module Completed Module In Progress Module Locked
Introduction to Course and Logistics 33222    
  • Lecture: Overview of the Course and Logistics Page
    Lecture: Overview of the Course and Logistics Lecture: Overview of the Course and Logistics
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  • Tutorial: Computing on Beskow Page
    Tutorial: Computing on Beskow Tutorial: Computing on Beskow
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  • Get an Account on Beskow Page
    Get an Account on Beskow Get an Account on Beskow
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Connect to Beskow Page
    Connect to Beskow Connect to Beskow
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Move Data in/out. CFS vs AFS Page
    Move Data in/out. CFS vs AFS Move Data in/out. CFS vs AFS
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Compiling and Running a Job on Beskow Page
    Compiling and Running a Job on Beskow Compiling and Running a Job on Beskow
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Cheat Sheet Page
    Cheat Sheet Cheat Sheet
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Essential SLURM for job scheduling External Url
    Essential SLURM for job scheduling Essential SLURM for job scheduling
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  • Quiz: Using Beskow New Quiz
    Quiz: Using Beskow Quiz: Using Beskow
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  • Discussion: Questions on Connecting and Running on Beskow Discussion Topic
    Discussion: Questions on Connecting and Running on Beskow Discussion: Questions on Connecting and Running on Beskow
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Performance Modeling & Benchmarking

Performance Modeling & Benchmarking
Module Completed Module In Progress Module Locked
Performance Modeling & Benchmarking 33223    
  • Lecture: More on Cache Memories Page
    Lecture: More on Cache Memories Lecture: More on Cache Memories
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Basic Performance Models for Supercomputers Page
    Lecture: Basic Performance Models for Supercomputers Lecture: Basic Performance Models for Supercomputers
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Code: Matrix Multiplication Attachment
    Code: Matrix Multiplication Code: Matrix Multiplication
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  • Lecture: Benchmarks Page
    Lecture: Benchmarks Lecture: Benchmarks
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  • Lecture: Modeling Sparse Matrix Vector Multiply Page
    Lecture: Modeling Sparse Matrix Vector Multiply Lecture: Modeling Sparse Matrix Vector Multiply
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  • Code: STREAM Attachment
    Code: STREAM Code: STREAM
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  • Code: Sparse Matrix Vector Multiply Attachment
    Code: Sparse Matrix Vector Multiply Code: Sparse Matrix Vector Multiply
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Measuring Performance Page
    Lecture: Measuring Performance Lecture: Measuring Performance
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  • Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results External Url
    Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results Reading: Scientific Benchmarking of Parallel Computing Systems - Twelve ways to tell the masses when reporting performance results
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Matrix Transpose Page
    Lecture: Matrix Transpose Lecture: Matrix Transpose
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  • Code: Cache-Blocked Transpose Attachment
    Code: Cache-Blocked Transpose Code: Cache-Blocked Transpose
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  • Lecture: More on Caches II and III Page
    Lecture: More on Caches II and III Lecture: More on Caches II and III
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  • Reading: What Every Programmer Should Know About Memory External Url
    Reading: What Every Programmer Should Know About Memory Reading: What Every Programmer Should Know About Memory
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  • Lecture: Processing Instructions Page
    Lecture: Processing Instructions Lecture: Processing Instructions
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  • Lecture: Matrix-Matrix Multiply Page
    Lecture: Matrix-Matrix Multiply Lecture: Matrix-Matrix Multiply
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  • Lecture: Instruction Execution and Pipelining Page
    Lecture: Instruction Execution and Pipelining Lecture: Instruction Execution and Pipelining
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  • Lecture: Vectors Page
    Lecture: Vectors Lecture: Vectors
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  • Program Optimization Through Loop Vectorization External Url
    Program Optimization Through Loop Vectorization Program Optimization Through Loop Vectorization
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler Page
    Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler Lab: ssh, scp, AFS vs CFS, salloc, srun, change compiler
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lab: Memory Mountain, Clock Granularity and Perf Page
    Lab: Memory Mountain, Clock Granularity and Perf Lab: Memory Mountain, Clock Granularity and Perf
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Assignment I: Performance Modeling & Benchmarking Assignment
    Assignment I: Performance Modeling & Benchmarking Assignment I: Performance Modeling & Benchmarking
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Tutorial: Getting Assembly Instructions Page
    Tutorial: Getting Assembly Instructions Tutorial: Getting Assembly Instructions
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Tutorial: the Perf Tool Page
    Tutorial: the Perf Tool Tutorial: the Perf Tool
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Tutorial: RDTSC Instruction Page
    Tutorial: RDTSC Instruction Tutorial: RDTSC Instruction
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  • Discussion: Questions on Performance Modeling & Benchmarking Discussion Topic
    Discussion: Questions on Performance Modeling & Benchmarking Discussion: Questions on Performance Modeling & Benchmarking
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Intro to Parallelism and Shared Memory Programming with OpenMP

Intro to Parallelism and Shared Memory Programming with OpenMP
Module Completed Module In Progress Module Locked
Intro to Parallelism and Shared Memory Programming with OpenMP 33224    
  • Lecture: Discussing Speed-up Page
    Lecture: Discussing Speed-up Lecture: Discussing Speed-up
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Moore's Law and Speed-up Page
    Lecture: Moore's Law and Speed-up Lecture: Moore's Law and Speed-up
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Reading: Exponential Laws of Computing Growth External Url
    Reading: Exponential Laws of Computing Growth Reading: Exponential Laws of Computing Growth
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Threads Page
    Lecture: Threads Lecture: Threads
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  • Threads Cannot Be Implemented As a Library External Url
    Threads Cannot Be Implemented As a Library Threads Cannot Be Implemented As a Library
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: OpenMP Definitions Page
    Lecture: OpenMP Definitions Lecture: OpenMP Definitions
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  • Lecture: OpenMP Basics Page
    Lecture: OpenMP Basics Lecture: OpenMP Basics
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: OpenMP and maxloc Page
    Lecture: OpenMP and maxloc Lecture: OpenMP and maxloc
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Textbook: The Essential OpenMP External Url
    Textbook: The Essential OpenMP Textbook: The Essential OpenMP
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: Calculate Pi with OpenMP Page
    Lecture: Calculate Pi with OpenMP Lecture: Calculate Pi with OpenMP
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Reading: 32 OpenMP Traps For C/C++ Developers External Url
    Reading: 32 OpenMP Traps For C/C++ Developers Reading: 32 OpenMP Traps For C/C++ Developers
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  • Assignment II: Programming with OpenMP Assignment
    Assignment II: Programming with OpenMP Assignment II: Programming with OpenMP
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Discussion: Questions on Parallelism and OpenMP Discussion Topic
    Discussion: Questions on Parallelism and OpenMP Discussion: Questions on Parallelism and OpenMP
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Distributed Memory Programming & MPI

Distributed Memory Programming & MPI
Module Completed Module In Progress Module Locked
Distributed Memory Programming & MPI 33225    
  • Lecture: Distributed Memory Parallelism Page
    Lecture: Distributed Memory Parallelism Lecture: Distributed Memory Parallelism
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  • Lecture: Parallel Programming Models for Scientific Computing Page
    Lecture: Parallel Programming Models for Scientific Computing Lecture: Parallel Programming Models for Scientific Computing
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  • Lecture: Message Passing & our First MPI Code Page
    Lecture: Message Passing & our First MPI Code Lecture: Message Passing & our First MPI Code
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  • Lecture: MPI Basic Send/Receive & our second MPI code Page
    Lecture: MPI Basic Send/Receive & our second MPI code Lecture: MPI Basic Send/Receive & our second MPI code
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Textbook: Basic Usage of MPI with Send/Receive External Url
    Textbook: Basic Usage of MPI with Send/Receive Textbook: Basic Usage of MPI with Send/Receive
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Lecture: More on Point-to-Point Communication Page
    Lecture: More on Point-to-Point Communication Lecture: More on Point-to-Point Communication
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  • Textbook: MPI Non-Blocking Communication External Url
    Textbook: MPI Non-Blocking Communication Textbook: MPI Non-Blocking Communication
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  • Lecture: Calculate PI with MPI Page
    Lecture: Calculate PI with MPI Lecture: Calculate PI with MPI
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  • Lecture: MPI Datatypes Page
    Lecture: MPI Datatypes Lecture: MPI Datatypes
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  • Textbook: Fun with Datatypes External Url
    Textbook: Fun with Datatypes Textbook: Fun with Datatypes
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  • Lecture: MPI Process Topology Page
    Lecture: MPI Process Topology Lecture: MPI Process Topology
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  • Textbook: Topologies. Example with Poisson Problem. External Url
    Textbook: Topologies. Example with Poisson Problem. Textbook: Topologies. Example with Poisson Problem.
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  • Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures External Url
    Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures Reading: Generic Topology Mapping Strategies for Large-scale Parallel Architectures
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  • Reading: Implementing the MPI process topology mechanism External Url
    Reading: Implementing the MPI process topology mechanism Reading: Implementing the MPI process topology mechanism
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  • Lecture: Collective Communication and Computation in MPI Page
    Lecture: Collective Communication and Computation in MPI Lecture: Collective Communication and Computation in MPI
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  • Lecture: More about Collective Communication and Computation in MPI Page
    Lecture: More about Collective Communication and Computation in MPI Lecture: More about Collective Communication and Computation in MPI
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  • Textbook: Collective Communication External Url
    Textbook: Collective Communication Textbook: Collective Communication
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  • Lecture: MPI One-Sided Communication & MPI Windows Page
    Lecture: MPI One-Sided Communication & MPI Windows Lecture: MPI One-Sided Communication & MPI Windows
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  • Lecture: MPI One-Sided Data Movement and Aggregation Page
    Lecture: MPI One-Sided Data Movement and Aggregation Lecture: MPI One-Sided Data Movement and Aggregation
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  • Lecture: More about One-Sided Communication Page
    Lecture: More about One-Sided Communication Lecture: More about One-Sided Communication
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  • Lecture: Example of MPI One-Sided Communication Page
    Lecture: Example of MPI One-Sided Communication Lecture: Example of MPI One-Sided Communication
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  • Lecture: Performance Modeling & Ping-Pong Page
    Lecture: Performance Modeling & Ping-Pong Lecture: Performance Modeling & Ping-Pong
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  • Lecture: Hybrid Programming with MPI Page
    Lecture: Hybrid Programming with MPI Lecture: Hybrid Programming with MPI
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  • Lecture: Hybrid Programming with MPI Shared Windows Page
    Lecture: Hybrid Programming with MPI Shared Windows Lecture: Hybrid Programming with MPI Shared Windows
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  • Assignment III: MPI Programming Assignment
    Assignment III: MPI Programming Assignment III: MPI Programming
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  • Discussion: Questions on Distributed Memory Programming & MPI Discussion Topic
    Discussion: Questions on Distributed Memory Programming & MPI Discussion: Questions on Distributed Memory Programming & MPI
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Course Project: Distributed Matrix-Matrix Multiply with Fox Algorithm

Course Project: Distributed Matrix-Matrix Multiply with Fox Algorithm
Module Completed Module In Progress Module Locked
Course Project: Distributed Matrix-Matrix Multiply with Fox Algorithm 36435    
  • Project Background - Distributed Matrix-Matrix Multiply with Fox Algorithm Page
    Project Background - Distributed Matrix-Matrix Multiply with Fox Algorithm Project Background - Distributed Matrix-Matrix Multiply with Fox Algorithm
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
  • Tutorial: Matrix Multiplication with Intel MKL Page
    Tutorial: Matrix Multiplication with Intel MKL Tutorial: Matrix Multiplication with Intel MKL
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  • Grading Criteria Page
    Grading Criteria Grading Criteria
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  • Discussion: Final Project Discussion Topic
    Discussion: Final Project Discussion: Final Project
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  • Final Project Submission Assignment
    Final Project Submission Final Project Submission
    Score at least   Must score at least   to complete this module item Scored at least   Module item has been completed by scoring at least   View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
 
minimum score must view must submit must contribute